Photobacterium damselae subsp. piscicida

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae subsp. piscicida is a marine, gram-negative bacterium characterized by its rod shape and motility, facilitated by the presence of flagella. This pathogen thrives in mesophilic temperature ranges, which is typical of many marine environments. P. damselae subsp. piscicida is known to infect various fish species, including Paralichthys olivaceus (olive flounder), Seriola quinqueradiata (Japanese amberjack), and Seriola lalandi (yellowtail). It is associated with significant health issues in these hosts, causing diseases such as edwardsiellosis and photobacteriosis. These diseases can lead to severe morbidity and mortality in affected fish populations, making the bacterium a concern for aquaculture and marine biodiversity. The bacterium is also recognized for its pathogenic potential in humans, although the details of these interactions are less commonly emphasized in the literature. Its single replicon structure suggests a streamlined genomic organization, which may be advantageous for rapid adaptation to its marine habitat. Considering its impact on both fish and potential implications for human health, P. damselae subsp. piscicida serves as a critical organism for study within marine microbiology. Understanding its pathogenic mechanisms and ecological interactions could provide insights into managing diseases in aquaculture settings and preserving marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainsubsp. piscicida

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Photobacterium damselae subsp. piscicida
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatMarine
Biotic relationshipNot Available
Host(s)Paralichthys olivaceus, Seriola quinqueradiata, Seriola lalandi
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Photobacterium damselae subsp. piscicida DNA, contig: PDPJ_ctg#7,

Gene Summary

Adenine Count

1332071 bp

Thymine Count

1333580 bp

Guanine Count

937706 bp

Cytosine Count

943894 bp

Genome Length

4547251 bp

Protein-coding Genes

5107 genes

Non-Coding Genes

177 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fatty acid oxidation complex subunit alphaPDPJ_1_01310Not AvailablePositive1296446 - 129862679519.8
3-ketoacyl-coa thiolasePDPJ_1_01311Not AvailablePositive1298634 - 129980041369.3
putative acrylyl-coa reductase acuiPDPJ_1_01312Not AvailablePositive1300002 - 130098234925.4
nodulation protein d 2PDPJ_1_01313Not AvailableNegative1301066 - 130201035664.6
hypothetical proteinPDPJ_1_01314Not AvailableNegative1302090 - 13022726860.3
sulfurtransferase tusaPDPJ_1_01315Not AvailablePositive1302415 - 13026729558.55
group ii intron-encoded protein ltraPDPJ_1_01316Not AvailableNegative1302699 - 130400950325.0
hypothetical proteinPDPJ_1_01317Not AvailableNegative1304661 - 13048436846.69
hypothetical proteinPDPJ_1_01318Not AvailableNegative1304959 - 130551619789.1
putative lipoprotein yiad precursorPDPJ_1_01319Not AvailableNegative1305817 - 130650623584.0

Displaying genes 1401 – 1410 of 5284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039911Acinetobacter radioresistens NIPH 2130Not available138-08-9Not available
BASm0039983Atopobium parvulum DSM 20469Not available89771-75-5Not available

Displaying 1–7 of 7 metabolites

Health Effects

Health ConditionRelationReference
EdwardsiellosisCausesPMC8677005
PhotobacteriosisCausesPMC10441182

Displaying health effects 1 – 2 of 2 in total