Photobacterium damselae subsp. piscicida

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae subsp. piscicida is a Gram-negative bacterium recognized for its relevance in aquatic environments, particularly concerning fish health. This subspecies is a member of the Vibrionaceae family and is characterized by its rod-shaped morphology. As a marine bacterium, P. damselae subsp. piscicida is typically found in coastal waters, where it may engage in various ecological interactions with marine organisms. The Gram-negative nature of P. damselae subsp. piscicida indicates the presence of an outer membrane that contains lipopolysaccharides, which may play a role in its environmental adaptability and interactions with host organisms. This structural characteristic is commonly associated with bacteria that inhabit diverse aquatic habitats, providing insights into their survival strategies in fluctuating conditions. Ecologically, P. damselae subsp. piscicida's presence in marine ecosystems may influence microbial community dynamics, particularly in relation to its interactions with fish and other aquatic organisms. Its metabolic capabilities are adapted to the marine environment, which may allow it to utilize various organic compounds present in seawater. This adaptability underscores the potential for P. damselae subsp. piscicida to contribute to nutrient cycling within these ecosystems, highlighting its role in the broader context of marine microbiology. Overall, the study of this bacterium offers valuable insights into the complex interactions within marine microbiomes and the health of aquatic life.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainsubsp. piscicida

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Photobacterium damselae subsp. piscicida


Gene Summary

Adenine Count

1332071 bp

Thymine Count

1333580 bp

Guanine Count

937706 bp

Cytosine Count

943894 bp

Genome Length

4547251 bp

Protein-coding Genes

5107 genes

Non-Coding Genes

177 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinPDPJ_1_00001Not Available+598 - 87310458.7
putative transposasePDPJ_1_00002Not Available-1199 - 183725027.6
putative transposasePDPJ_1_00003Not Available-1798 - 229219008.4
hypothetical proteinPDPJ_1_00004Not Available-2415 - 278314123.8
hypothetical proteinPDPJ_1_00005Not Available-2903 - 31248291.33
hypothetical proteinPDPJ_1_00006Not Available-3173 - 344810458.7
hypothetical proteinPDPJ_1_00007Not Available+3584 - 388011342.4
putative transposasePDPJ_1_00008Not Available+4003 - 509742839.4
putative mfs-type transporter yhjxPDPJ_1_00009Not Available+5261 - 612731741.9
protease htpxPDPJ_1_00010Not Available-6291 - 717231938.3

Displaying genes 1 – 10 of 5284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites