Nocardioides sp. PD653

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. PD653 is characterized by having a single replicon, which is a notable trait for this organism. The genome of Nocardioides sp. PD653 is cataloged under the accession number BDJG00000000.1, indicating its availability for further genomic studies and analysis. Nocardioides species are typically found in diverse environments, including soil and marine ecosystems, where they play significant roles in the degradation of complex organic compounds. This ability to break down various substrates may contribute to ecological balance and nutrient cycling in their respective habitats. Understanding the genomic characteristics of Nocardioides sp. PD653, particularly its single replicon structure, could provide insights into its metabolic capabilities and ecological functions. The study of this organism could enhance our knowledge of microbial diversity and its potential applications in bioremediation processes, where such microorganisms can be harnessed to degrade pollutants and contribute to environmental health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. PD653
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. PD653 DNA, contig: 87, whole genome shotgun

Gene Summary

Adenine Count

739375 bp

Thymine Count

732769 bp

Guanine Count

1792588 bp

Cytosine Count

1808346 bp

Genome Length

5073078 bp

Protein-coding Genes

5002 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha,alpha-trehalose-phosphate synthasePD653_0275Not AvailableNegative283260 - 28469953915.2
oxidoreductase domain-containing proteinPD653_0276Not AvailableNegative284806 - 28581335788.7
hypothetical proteinPD653_0277Not AvailablePositive285923 - 28621611268.4
uncharacterized protein (precursor)PD653_0278Not AvailablePositive286222 - 28672517702.6
had family hydrolasePD653_0279Not AvailablePositive286814 - 28765929813.4
atp-dependent lon proteasePD653_0280Not AvailablePositive287768 - 29008683036.8
threonine synthasePD653_0281Not AvailablePositive290392 - 29166044609.8
sulfur transfer protein thisPD653_0282Not AvailablePositive291680 - 2919589629.31
ecf subfamily rna polymerase sigma-24 subunitPD653_0283Not AvailableNegative292032 - 29324943127.0
ycii-related proteinPD653_0284Not AvailableNegative293257 - 29360112269.4

Displaying genes 331 – 340 of 5087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.