Nocardioides sp. PD653

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. PD653 is characterized by having a single replicon, which is a notable trait for this organism. The genome of Nocardioides sp. PD653 is cataloged under the accession number BDJG00000000.1, indicating its availability for further genomic studies and analysis. Nocardioides species are typically found in diverse environments, including soil and marine ecosystems, where they play significant roles in the degradation of complex organic compounds. This ability to break down various substrates may contribute to ecological balance and nutrient cycling in their respective habitats. Understanding the genomic characteristics of Nocardioides sp. PD653, particularly its single replicon structure, could provide insights into its metabolic capabilities and ecological functions. The study of this organism could enhance our knowledge of microbial diversity and its potential applications in bioremediation processes, where such microorganisms can be harnessed to degrade pollutants and contribute to environmental health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. PD653
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. PD653 DNA, contig: 87, whole genome shotgun

Gene Summary

Adenine Count

739375 bp

Thymine Count

732769 bp

Guanine Count

1792588 bp

Cytosine Count

1808346 bp

Genome Length

5073078 bp

Protein-coding Genes

5002 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine kinase, dimerisation and phosphoacceptor regionPD653_0106Not AvailablePositive107017 - 10824643598.6
response regulator receiverPD653_0107Not AvailablePositive108258 - 10890523500.3
phosphoribosylaminoimidazole carboxylase catalytic subunitPD653_0108Not AvailableNegative108917 - 10940516654.2
phosphoribosylaminoimidazole carboxylase atpase subunitPD653_0109Not AvailableNegative109431 - 11059141263.2
transcriptional regulator domain-containing proteinPD653_0110Not AvailableNegative110613 - 11091511845.0
adenylate cyclasePD653_0111Not AvailableNegative110998 - 11200836269.2
membrane-flanked domain-containing proteinPD653_0112Not AvailableNegative111995 - 11249818573.8
biotin--acetyl-coa-carboxylase ligasePD653_0113Not AvailableNegative112511 - 11334428834.7
acetyl/propionyl-coa carboxylase, carboxyltransferase subunitPD653_0114Not AvailablePositive113349 - 11500459701.9
uncharacterized proteinPD653_0115Not AvailablePositive115124 - 1153849177.68

Displaying genes 161 – 170 of 5087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.