Nocardioides sp. PD653

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. PD653 is characterized by having a single replicon, which is a notable trait for this organism. The genome of Nocardioides sp. PD653 is cataloged under the accession number BDJG00000000.1, indicating its availability for further genomic studies and analysis. Nocardioides species are typically found in diverse environments, including soil and marine ecosystems, where they play significant roles in the degradation of complex organic compounds. This ability to break down various substrates may contribute to ecological balance and nutrient cycling in their respective habitats. Understanding the genomic characteristics of Nocardioides sp. PD653, particularly its single replicon structure, could provide insights into its metabolic capabilities and ecological functions. The study of this organism could enhance our knowledge of microbial diversity and its potential applications in bioremediation processes, where such microorganisms can be harnessed to degrade pollutants and contribute to environmental health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. PD653
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. PD653 DNA, contig: 87, whole genome shotgun

Gene Summary

Adenine Count

739375 bp

Thymine Count

732769 bp

Guanine Count

1792588 bp

Cytosine Count

1808346 bp

Genome Length

5073078 bp

Protein-coding Genes

5002 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized proteinPD653_0096Not AvailableNegative93995 - 9519442977.1
major facilitator transporterPD653_0097Not AvailablePositive95255 - 9648142697.0
hypothetical proteinPD653_0098Not AvailablePositive96591 - 9902381614.8
radical sam domain-containing proteinPD653_0099Not AvailableNegative99046 - 10099272750.8
uncharacterized proteinPD653_0100Not AvailableNegative101071 - 1012295552.52
drug resistance mfs transporter, drug:h antipor ter-2 familyPD653_0101Not AvailableNegative101258 - 10287456666.5
peptidase m15d vanx d-ala-d-ala dipeptidasePD653_0102Not AvailablePositive103364 - 10396921292.2
alanine racemasePD653_0103Not AvailablePositive103966 - 10511439600.4
d-alanine--d-alanine ligasePD653_0104Not AvailablePositive105111 - 10604931868.2
acyltransferase 3PD653_0105Not AvailablePositive106046 - 10702035353.0

Displaying genes 151 – 160 of 5087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.