Nocardioides sp. PD653

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. PD653 is characterized by having a single replicon, which is a notable trait for this organism. The genome of Nocardioides sp. PD653 is cataloged under the accession number BDJG00000000.1, indicating its availability for further genomic studies and analysis. Nocardioides species are typically found in diverse environments, including soil and marine ecosystems, where they play significant roles in the degradation of complex organic compounds. This ability to break down various substrates may contribute to ecological balance and nutrient cycling in their respective habitats. Understanding the genomic characteristics of Nocardioides sp. PD653, particularly its single replicon structure, could provide insights into its metabolic capabilities and ecological functions. The study of this organism could enhance our knowledge of microbial diversity and its potential applications in bioremediation processes, where such microorganisms can be harnessed to degrade pollutants and contribute to environmental health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. PD653
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. PD653 DNA, contig: 87, whole genome shotgun

Gene Summary

Adenine Count

739375 bp

Thymine Count

732769 bp

Guanine Count

1792588 bp

Cytosine Count

1808346 bp

Genome Length

5073078 bp

Protein-coding Genes

5002 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized proteinPD653_0076Not AvailablePositive71325 - 7244038527.4
uncharacterized protein (precursor)PD653_0077Not AvailableNegative72544 - 7284310579.1
nad-dependent dna ligase ligaPD653_0078Not AvailableNegative72954 - 7508676788.0
tetr family transcriptional regulatorPD653_0079Not AvailablePositive75285 - 7591122676.1
emrb/qaca family drug resistance transporterPD653_0080Not AvailablePositive75911 - 7752155277.9
pfpi family intracellular peptidasePD653_0081Not AvailableNegative77591 - 7812718878.1
methionine synthase, vitamin-b12 independentPD653_0082Not AvailableNegative78166 - 7917034776.4
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferasePD653_0083Not AvailableNegative79167 - 8026438964.0
class v aminotransferasePD653_0084Not AvailableNegative80261 - 8156545348.7
uncharacterized proteinPD653_0085Not AvailablePositive81901 - 8320847394.3

Displaying genes 131 – 140 of 5087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.