Ideonella sakaiensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Piscinibacter

Description

Ideonella sakaiensis is a notable bacterium recognized for its unique ability to degrade polyethylene terephthalate (PET), a common plastic. It possesses a single replicon, which is indicative of its genetic structure and may contribute to its metabolic capabilities. The strain was first isolated from a plastic waste site in Japan, highlighting its ecological relevance in environments contaminated with plastics. The genome of Ideonella sakaiensis has been sequenced and is available under the accession number BBYR00000000.1. This genomic information provides insights into the pathways utilized by the bacterium to break down PET, potentially leading to biotechnological applications aimed at plastic waste reduction. The ability of Ideonella sakaiensis to utilize PET as a carbon source is significant, as it may offer a natural solution to the growing problem of plastic pollution. By understanding the metabolic processes and mechanisms employed by this bacterium, researchers can explore its potential for bioremediation strategies in contaminated ecosystems. In summary, Ideonella sakaiensis represents an important advancement in microbial ecology and biotechnology, showcasing nature's potential in addressing human-induced environmental challenges. Its specific traits, including a single replicon and PET-degrading capabilities, position it as a key organism for future research focused on sustainable waste management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusPiscinibacter
SpeciesPiscinibacter sakaiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ideonella sakaiensis DNA, contig: ISCTG227, whole genome shotgun

Gene Summary

Adenine Count

834898 bp

Thymine Count

829059 bp

Guanine Count

2235067 bp

Cytosine Count

2243039 bp

Genome Length

6142063 bp

Protein-coding Genes

5497 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative transmembrane proteinISF6_4286Not AvailablePositive4966193 - 496664214630.3
gene ii and x proteinsISF6_4287Not AvailablePositive4966653 - 496708114393.8
guanylate kinaseISF6_4288Not AvailablePositive4967135 - 496776423307.9
dna-directed rna polymerase, omega subunitISF6_4289Not AvailablePositive4967795 - 49679987386.25
gtp pyrophosphokinase/guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolaseISF6_4290Not AvailablePositive4968150 - 497043583697.8
thymidine kinaseISF6_4291Not AvailableNegative4970455 - 497104821636.0
transcription elongation factor grebISF6_4292Not AvailableNegative4971061 - 497162120355.9
regulatory protein, luxr:response regulator receiverISF6_4293Not AvailableNegative4971632 - 497227023151.2
nitrate/nitrite sensor proteinISF6_4294Not AvailableNegative4972270 - 497343042034.1
methyl-accepting chemotaxis proteinISF6_4295Not AvailablePositive4973649 - 497413417183.3

Displaying genes 4581 – 4590 of 5577 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0040180Bifidobacterium kashiwanohense JCM 15439 = DSM 21854Not availableNot availableNot available

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.