Ideonella sakaiensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Piscinibacter

Description

Ideonella sakaiensis is a notable bacterium recognized for its unique ability to degrade polyethylene terephthalate (PET), a common plastic. It possesses a single replicon, which is indicative of its genetic structure and may contribute to its metabolic capabilities. The strain was first isolated from a plastic waste site in Japan, highlighting its ecological relevance in environments contaminated with plastics. The genome of Ideonella sakaiensis has been sequenced and is available under the accession number BBYR00000000.1. This genomic information provides insights into the pathways utilized by the bacterium to break down PET, potentially leading to biotechnological applications aimed at plastic waste reduction. The ability of Ideonella sakaiensis to utilize PET as a carbon source is significant, as it may offer a natural solution to the growing problem of plastic pollution. By understanding the metabolic processes and mechanisms employed by this bacterium, researchers can explore its potential for bioremediation strategies in contaminated ecosystems. In summary, Ideonella sakaiensis represents an important advancement in microbial ecology and biotechnology, showcasing nature's potential in addressing human-induced environmental challenges. Its specific traits, including a single replicon and PET-degrading capabilities, position it as a key organism for future research focused on sustainable waste management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusPiscinibacter
SpeciesPiscinibacter sakaiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ideonella sakaiensis DNA, contig: ISCTG227, whole genome shotgun

Gene Summary

Adenine Count

834898 bp

Thymine Count

829059 bp

Guanine Count

2235067 bp

Cytosine Count

2243039 bp

Genome Length

6142063 bp

Protein-coding Genes

5497 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated protein cas1ISF6_3680Not AvailablePositive4568560 - 456956136348.6
crispr-associated protein, ypo2467 familyISF6_3681Not AvailablePositive4569558 - 4572929125828.0
crispr-associated protein, csy1 familyISF6_3682Not AvailablePositive4572973 - 457431649634.9
crispr-associated protein, csy2 familyISF6_3683Not AvailablePositive4574313 - 457532637239.2
crispr-associated protein, csy3 familyISF6_3684Not AvailablePositive4575349 - 457638337967.9
crispr-associated protein, csy4 familyISF6_3685Not AvailablePositive4576388 - 457695421097.4
trna nucleotidyltransferaseISF6_3686Not AvailablePositive4580512 - 458170542632.2
hypothetical proteinISF6_3687Not AvailableNegative4581702 - 45818967465.53
cog1565 family proteinISF6_3688Not AvailableNegative4581893 - 458303840187.8
folm alternative dihydrofolate reductase 1ISF6_3689Not AvailablePositive4583057 - 458386027660.9

Displaying genes 4221 – 4230 of 5577 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.