Sphingomonas changbaiensis NBRC 104936

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas changbaiensis NBRC 104936 is a Gram-negative, aerobic bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species is classified as mesophilic, with an optimal growth temperature of 29°C, indicating it thrives in moderate temperature conditions. The organism is noted for having a single replicon, which is significant for its genetic organization and replication processes. The genomic information for Sphingomonas changbaiensis is accessible under the accession number BBWU00000000.1, allowing for further study and analysis of its genetic traits. In the context of ecology, the traits of Sphingomonas changbaiensis suggest that it may play a role in various environmental processes, particularly in aerobic conditions where it can utilize oxygen for metabolism. Its ability to thrive in moderate temperatures may enable it to inhabit diverse ecosystems, potentially contributing to nutrient cycling and organic matter degradation in microbial communities. Understanding the ecological roles of such bacteria is crucial for comprehending their importance in environmental microbiology and their potential applications in bioremediation and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas changbaiensis
StrainNBRC 104936

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas changbaiensis NBRC 104936
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas changbaiensis NBRC 104936 DNA, contig: SCH01S53,

Gene Summary

Adenine Count

543206 bp

Thymine Count

541502 bp

Guanine Count

1062619 bp

Cytosine Count

1070048 bp

Genome Length

3217375 bp

Protein-coding Genes

3152 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSCH01S_01_00110Not AvailablePositive6089 - 747750369.5
hypothetical proteinSCH01S_01_00120Not AvailableNegative7470 - 820126342.0
hypothetical proteinSCH01S_01_00130O27068Negative8198 - 926838240.6
hypothetical proteinSCH01S_01_00140Not AvailableNegative9297 - 95609373.88
hypothetical proteinSCH01S_01_00150Not AvailablePositive9832 - 1067430554.6
hypothetical proteinSCH01S_01_00160Not AvailablePositive11308 - 1164912507.3
hypothetical proteinSCH01S_01_00170Not AvailableNegative11728 - 119467843.41
putative conjugal transfer protein trbfSCH01S_01_00180Not AvailablePositive12574 - 1288510935.8
putative conjugal transfer protein trbgSCH01S_01_00190P54915Positive12882 - 1382633413.2
putative conjugal transfer protein trbiSCH01S_01_00200P55406Positive13823 - 1502242424.0

Displaying genes 11 – 20 of 3201 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

264 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da

Displaying 1–10 of 264 metabolites

Health Effects

No health effects information available for this bacterium.