Alicycliphilus sp. B1

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Alicycliphilus sp. B1 is a Gram-negative bacterium characterized by its bacilli shape. This species possesses flagella, which enables motility, an important trait that may influence its ecological interactions. Alicycliphilus sp. B1 has a single replicon, indicating it has a streamlined genomic organization. The genomic data for this organism is accessible under the accession number BBSJ00000000.1. The presence of flagella in Alicycliphilus sp. B1 suggests that it may be adapted to specific environments where mobility is advantageous, such as in aquatic or soil habitats. The motility provided by flagella could facilitate the organism's ability to locate nutrients or evade unfavorable conditions. Additionally, as a Gram-negative bacterium, Alicycliphilus sp. B1 may possess unique outer membrane features that contribute to its survival and adaptability in diverse environments. The Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane, often plays a role in resistance to certain antibiotics and environmental stresses. In summary, Alicycliphilus sp. B1's motility, coupled with its Gram-negative nature, suggests it may occupy a niche where movement and adaptability are critical for survival and ecological function. Understanding these traits can provide insights into the role of this bacterium within its ecosystem, particularly in nutrient cycling and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus sp. B1
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Alicycliphilus sp. B1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alicycliphilus sp. B1 DNA, contig: contig059, whole genome shotgun

Gene Summary

Adenine Count

1221346 bp

Thymine Count

1218795 bp

Guanine Count

2513166 bp

Cytosine Count

2512652 bp

Genome Length

7465959 bp

Protein-coding Genes

7354 genes

Non-Coding Genes

143 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Major capsid proteinALISP_2090Not AvailablePositive2063436 - 206466843311.8
Putative prohead proteaseALISP_2091Not AvailablePositive2064681 - 206520818817.2
Portal-like proteinALISP_2092P49859Positive2065205 - 206641043754.3
hnh endonucleaseALISP_2093Not AvailablePositive2066413 - 206681415080.3
Hypothetical proteinALISP_2094Not AvailablePositive2066880 - 206729314850.6
Portal proteinALISP_2095Not AvailablePositive2067290 - 206879554463.3
phage dna packaging-like proteinALISP_2096Not AvailablePositive2068941 - 20692169906.9
Head closure proteinALISP_2097Not AvailablePositive2069213 - 206953011877.3
AttrNot AvailableNot AvailablePositive2069545 - 2069567Not Available
AttrNot AvailableNot AvailablePositive2069635 - 2069679Not Available

Displaying genes 31 – 40 of 7497 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

335 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da

Displaying 1–10 of 335 metabolites

Health Effects

No health effects information available for this bacterium.