Pseudomonas alcaligenes NBRC 14159

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Aquipseudomonas

Description

Pseudomonas alcaligenes NBRC 14159 is a notable bacterium primarily found in diverse soil environments, including crude oil-contaminated soil, forest soil, and mangrove soil, particularly in the Sundarbans mangrove ecosystem. This organism thrives in aerobic conditions, indicating its reliance on oxygen for metabolic processes. With a single replicon, Pseudomonas alcaligenes NBRC 14159 exhibits a streamlined genetic structure, which may contribute to its adaptability in varying soil environments. The genomic sequence is cataloged under the accession number BATI00000000.1, providing a reference for further studies on its genetic and functional characteristics. The presence of Pseudomonas alcaligenes in crude oil-contaminated areas underscores its potential role in bioremediation processes. Its ability to thrive in such polluted habitats suggests that this bacterium might possess enzymatic pathways capable of degrading hydrocarbons, thus contributing to the ecological restoration of contaminated soils. Moreover, its isolation from mangrove and forest soils indicates its ecological versatility and potential interactions within diverse microbial communities, further supporting the importance of Pseudomonas alcaligenes in maintaining soil health and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusAquipseudomonas
SpeciesAquipseudomonas alcaligenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcrude oil contaminated soil; forest soil; mangrove soil; soil; Sundarbans mangrove
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas alcaligenes NBRC 14159 DNA, contig: PA6122, whole

Gene Summary

Adenine Count

859514 bp

Thymine Count

839884 bp

Guanine Count

1541484 bp

Cytosine Count

1582508 bp

Genome Length

4823390 bp

Protein-coding Genes

4457 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenase flavoprotein subunitPA6_007_00900Not AvailablePositive1081239 - 108301163422.5
succinate dehydrogenase iron-sulfur protein subunitPA6_007_00910Not AvailablePositive1083023 - 108374226627.3
2-oxoglutarate dehydrogenase e1 componentPA6_007_00920Not AvailablePositive1083986 - 1086817106346.0
2-oxoglutarate dehydrogenase e2 componentPA6_007_00930Not AvailablePositive1086889 - 108811542470.4
dihydrolipoyl dehydrogenasePA6_007_00940Not AvailablePositive1088184 - 108962050153.8
succinyl-coa ligase subunit betaPA6_007_00950Not AvailablePositive1089798 - 109096441463.0
succinyl-coa synthetase subunit alphaPA6_007_00960Not AvailablePositive1090964 - 109185130236.7
putative branched-chain amino acid transporterPA6_007_00970Not AvailablePositive1092138 - 109345145081.6
putative hydrolasePA6_007_00980Not AvailablePositive1093608 - 109442630893.9
hypothetical proteinPA6_007_00990Not AvailablePositive1094423 - 109528631656.2

Displaying genes 1131 – 1140 of 4593 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039925Aeromonas jandaei Riv2Not available29908-03-0Not available
BASm0040017Bacillus nealsonii AAU1Not available15502-74-6Not available
BASm0040171Clostridium sp.Not available124-58-3Not available
BASm0040275Halobacterium sp. NRC-1Not availableNot availableNot available

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.