Gordonia terrae NBRC 100016

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Gordoniaceae

Genus

Gordonia

Description

Gordonia terrae NBRC 100016 is a notable species of bacteria characterized by the presence of flagella, which facilitates motility. The organism possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The genomic information for this bacterium can be found under the accession number BAFD00000000.1. This bacterium is part of the genus Gordonia, which is known for its ability to degrade complex organic compounds, including those found in pollutants. The presence of flagella suggests that Gordonia terrae can actively navigate its environment, which may enhance its efficiency in locating and utilizing substrates for growth and metabolism. In ecological contexts, the motility provided by flagella may play a crucial role in the bacterium's survival and proliferation in diverse habitats, particularly in environments where organic pollutants are present. The ability to move toward nutrient sources or away from unfavorable conditions can be vital for the bacterium's ecological success. Overall, the traits of Gordonia terrae NBRC 100016 underscore its potential significance in bioremediation processes, targeting environmental contaminants through its inherent metabolic capabilities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia terrae
StrainNBRC 100016

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gordonia terrae NBRC 100016


Gene Summary

Adenine Count

916581 bp

Thymine Count

906704 bp

Guanine Count

1909045 bp

Cytosine Count

1936819 bp

Genome Length

5669149 bp

Protein-coding Genes

5129 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinGOTRE_001_00010Not AvailablePositive1 - 244688923.5
5s ribosomal rnaNot AvailableNot AvailablePositive8 - 123Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive10 - 1527Not Available
hypothetical proteinGOTRE_001_00020Not AvailablePositive2443 - 286215695.5
hypothetical proteinGOTRE_001_00030Not AvailablePositive3022 - 343215296.1
putative major facilitator superfamily transporterGOTRE_001_00040Not AvailableNegative3524 - 488547969.1
3-isopropylmalate dehydratase small subunitGOTRE_001_00050Not AvailableNegative4885 - 542119094.6
3-isopropylmalate dehydratase large subunitGOTRE_001_00060Not AvailableNegative5418 - 668045609.3
putative carboxyvinyl-carboxyphosphonate phosphorylmutaseGOTRE_001_00070Not AvailableNegative6680 - 755230879.9
putative iclr family transcriptional regulatorGOTRE_001_00080Not AvailablePositive7653 - 848929439.1

Displaying genes 1 – 10 of 5179 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

449 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001593L-xylo-hex-3-ulonolactoneC6H8O6Chemical structure of L-xylo-hex-3-ulonolactoneNot available
Average176.1241Da
Monoisotopic176.032087988Da

Displaying 1–10 of 449 metabolites

Health Effects

No health effects information available for this bacterium.