Afipia sp. P52-10

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Afipia

Description

Afipia sp. P52-10 is a Gram-negative bacterium characterized by its rod-shaped morphology. The presence of flagella indicates that this organism is motile, which may play a role in its ability to navigate through various environments. The genetic material of Afipia sp. P52-10 is organized in a single replicon, suggesting a streamlined genomic architecture typical of many bacteria. The accession number for the genomic sequence of Afipia sp. P52-10 is AZSJ00000000.1, which allows for further exploration and comparison with other bacterial species. This genetic information can provide insights into the organism's metabolic pathways, environmental adaptations, and potential interactions with other microorganisms. Ecologically, the motility provided by flagella may enhance the bacterium's ability to colonize specific niches or interact with host organisms. Understanding the traits of Afipia sp. P52-10 can contribute to broader research in microbial ecology and the roles that such bacteria play within their environments, including their potential associations with plants or animals. The single replicon may also suggest that Afipia sp. P52-10 could have a simple regulatory system for replication and gene expression, which can be advantageous in dynamic environments. Overall, the characteristics of Afipia sp. P52-10 underscore its potential significance in ecological contexts and its adaptability within various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusAfipia
SpeciesAfipia sp. P52-10
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Afipia sp. P52-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afipia sp. P52-10 contig000007, whole genome shotgun sequence.

Gene Summary

Adenine Count

931641 bp

Thymine Count

925159 bp

Guanine Count

1600152 bp

Cytosine Count

1628497 bp

Genome Length

5085524 bp

Protein-coding Genes

4683 genes

Non-Coding Genes

146 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cyszX566_08725Not AvailablePositive1781297 - 178204626626.3
endonuclease iiiX566_08730Not AvailableNegative1782098 - 178293130507.3
membrane proteinX566_08735Not AvailablePositive1782953 - 178346519033.9
6-o-methylguanine-dna methyltransferaseX566_08740Not AvailablePositive1783614 - 178453733397.1
membrane proteinX566_08745Not AvailablePositive1784598 - 178515219671.4
phosphoglyceromutaseX566_08750Not AvailableNegative1785199 - 178582223103.8
hypothetical proteinX566_08755Not AvailableNegative1785819 - 17859113591.38
dihydrodipicolinate reductaseX566_08760Not AvailableNegative1785948 - 178676328172.0
hypothetical proteinX566_08765Not AvailablePositive1786914 - 178790635939.1
hypothetical proteinX566_08770Not AvailableNegative1788062 - 178836411160.1

Displaying genes 1811 – 1820 of 4829 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.