Afipia sp. P52-10

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Afipia

Description

Afipia sp. P52-10 is a Gram-negative bacterium characterized by its rod-shaped morphology. The presence of flagella indicates that this organism is motile, which may play a role in its ability to navigate through various environments. The genetic material of Afipia sp. P52-10 is organized in a single replicon, suggesting a streamlined genomic architecture typical of many bacteria. The accession number for the genomic sequence of Afipia sp. P52-10 is AZSJ00000000.1, which allows for further exploration and comparison with other bacterial species. This genetic information can provide insights into the organism's metabolic pathways, environmental adaptations, and potential interactions with other microorganisms. Ecologically, the motility provided by flagella may enhance the bacterium's ability to colonize specific niches or interact with host organisms. Understanding the traits of Afipia sp. P52-10 can contribute to broader research in microbial ecology and the roles that such bacteria play within their environments, including their potential associations with plants or animals. The single replicon may also suggest that Afipia sp. P52-10 could have a simple regulatory system for replication and gene expression, which can be advantageous in dynamic environments. Overall, the characteristics of Afipia sp. P52-10 underscore its potential significance in ecological contexts and its adaptability within various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusAfipia
SpeciesAfipia sp. P52-10
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Afipia sp. P52-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afipia sp. P52-10 contig000007, whole genome shotgun sequence.

Gene Summary

Adenine Count

931641 bp

Thymine Count

925159 bp

Guanine Count

1600152 bp

Cytosine Count

1628497 bp

Genome Length

5085524 bp

Protein-coding Genes

4683 genes

Non-Coding Genes

146 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cpac-like proteinX566_06870Not AvailablePositive1408037 - 140853717475.2
flp pilus assembly protein tadgX566_06875Not AvailablePositive1408669 - 140922019954.1
flp pilus assembly protein tadgX566_06880Not AvailablePositive1409273 - 140978518150.7
translation initiation factor if-1X566_06885Not AvailableNegative1409890 - 141017410834.1
rna helicaseX566_06890Not AvailableNegative1410200 - 141172655263.5
hypothetical proteinX566_06895Not AvailablePositive1412042 - 14122818346.87
branched-chain amino acid abc transporter substrate-binding proteinX566_06900Not AvailablePositive1412540 - 141385948116.8
urea abc transporter permeaseX566_06905Not AvailablePositive1413958 - 141558056822.7
amino acid abc transporter permeaseX566_06910Not AvailablePositive1415747 - 141690442124.4
urea abc transporter atp-binding proteinX566_06915Not AvailablePositive1416901 - 141766228315.1

Displaying genes 1451 – 1460 of 4829 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.