Salinisphaera japonica YTM-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Salinisphaerales

Family

Salinisphaeraceae

Genus

Salinisphaera

Description

Salinisphaera japonica YTM-1 is a Gram-negative, aerobic bacterium characterized by its rod shape. This microorganism is non-motile, indicating that it does not possess the ability to move independently. Salinisphaera japonica YTM-1 has a mesophilic temperature range, with an optimal growth temperature of 25°C. The genome of Salinisphaera japonica YTM-1 contains one replicon, which suggests a relatively simple genetic structure compared to organisms with multiple replicons. The accession number for this organism is AYKG00000000.1, which can be used for further research and reference in genomic databases. From an ecological standpoint, the aerobic nature of Salinisphaera japonica YTM-1 implies that it plays a role in oxygen-rich environments, potentially contributing to processes such as organic matter decomposition or nutrient cycling in its habitat. Its mesophilic characteristics suggest that it thrives in moderate temperature conditions, which may influence its ecological interactions and distribution in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderSalinisphaerales
FamilySalinisphaeraceae
GenusSalinisphaera
SpeciesSalinisphaera japonica
StrainYTM-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salinisphaera japonica YTM-1 contig9, whole genome shotgun

Gene Summary

Adenine Count

601407 bp

Thymine Count

603772 bp

Guanine Count

1026667 bp

Cytosine Count

1030723 bp

Genome Length

3262569 bp

Protein-coding Genes

2917 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diaminohydroxyphosphoribosylaminopyrimidine deaminaseSAJA_12425Not AvailableNegative2636286 - 263737137969.2
nrdr family transcriptional regulatorSAJA_12430Not AvailableNegative2637404 - 263798221802.5
serine hydroxymethyltransferaseSAJA_12435Not AvailableNegative2638004 - 263929346113.6
hypothetical proteinSAJA_12440Not AvailableNegative2639500 - 264233793789.1
aspartyl-trna synthetaseSAJA_12445Not AvailableNegative2642645 - 264444166158.7
fmdb family transcriptional regulatorSAJA_12450Not AvailableNegative2644526 - 264487312003.7
udp-glucose 6-dehydrogenaseSAJA_12455Not AvailableNegative2644951 - 264630048712.0
Trna-gluNot AvailableNot AvailablePositive2646444 - 2646519Not Available
Trna-alaNot AvailableNot AvailablePositive2646527 - 2646602Not Available
aminotransferase degtSAJA_12475Not AvailableNegative2646665 - 264774739262.8

Displaying genes 2441 – 2450 of 2990 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.