Salinisphaera japonica YTM-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Salinisphaerales

Family

Salinisphaeraceae

Genus

Salinisphaera

Description

Salinisphaera japonica YTM-1 is a Gram-negative, aerobic bacterium characterized by its rod shape. This microorganism is non-motile, indicating that it does not possess the ability to move independently. Salinisphaera japonica YTM-1 has a mesophilic temperature range, with an optimal growth temperature of 25°C. The genome of Salinisphaera japonica YTM-1 contains one replicon, which suggests a relatively simple genetic structure compared to organisms with multiple replicons. The accession number for this organism is AYKG00000000.1, which can be used for further research and reference in genomic databases. From an ecological standpoint, the aerobic nature of Salinisphaera japonica YTM-1 implies that it plays a role in oxygen-rich environments, potentially contributing to processes such as organic matter decomposition or nutrient cycling in its habitat. Its mesophilic characteristics suggest that it thrives in moderate temperature conditions, which may influence its ecological interactions and distribution in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderSalinisphaerales
FamilySalinisphaeraceae
GenusSalinisphaera
SpeciesSalinisphaera japonica
StrainYTM-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salinisphaera japonica YTM-1 contig9, whole genome shotgun

Gene Summary

Adenine Count

601407 bp

Thymine Count

603772 bp

Guanine Count

1026667 bp

Cytosine Count

1030723 bp

Genome Length

3262569 bp

Protein-coding Genes

2917 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphotyrosine protein phosphataseSAJA_08020Not AvailablePositive1694906 - 169541818019.2
ribonuclease eSAJA_08025Not AvailableNegative1695488 - 1698823119836.0
23s rrna pseudouridylate synthase cSAJA_08030Not AvailablePositive1699131 - 170008735734.2
had family hydrolaseSAJA_08035Not AvailablePositive1700084 - 170075223787.4
hypothetical proteinSAJA_08040Not AvailableNegative1701003 - 17011073911.88
septum formation protein mafSAJA_08045Not AvailableNegative1701285 - 170188720865.9
hypothetical proteinSAJA_08050Not AvailablePositive1702000 - 170255419997.6
50s ribosomal protein l32SAJA_08055Not AvailablePositive1702576 - 17027617103.24
atp-dependent clp protease clpsSAJA_08060Not AvailablePositive1703023 - 170336412673.1
atp-dependent clp protease atp-binding proteinSAJA_08065Not AvailablePositive1703424 - 170568582737.8

Displaying genes 1571 – 1580 of 2990 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.