Salinisphaera japonica YTM-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Salinisphaerales

Family

Salinisphaeraceae

Genus

Salinisphaera

Description

Salinisphaera japonica YTM-1 is a Gram-negative, aerobic bacterium characterized by its rod shape. This microorganism is non-motile, indicating that it does not possess the ability to move independently. Salinisphaera japonica YTM-1 has a mesophilic temperature range, with an optimal growth temperature of 25°C. The genome of Salinisphaera japonica YTM-1 contains one replicon, which suggests a relatively simple genetic structure compared to organisms with multiple replicons. The accession number for this organism is AYKG00000000.1, which can be used for further research and reference in genomic databases. From an ecological standpoint, the aerobic nature of Salinisphaera japonica YTM-1 implies that it plays a role in oxygen-rich environments, potentially contributing to processes such as organic matter decomposition or nutrient cycling in its habitat. Its mesophilic characteristics suggest that it thrives in moderate temperature conditions, which may influence its ecological interactions and distribution in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderSalinisphaerales
FamilySalinisphaeraceae
GenusSalinisphaera
SpeciesSalinisphaera japonica
StrainYTM-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salinisphaera japonica YTM-1 contig9, whole genome shotgun

Gene Summary

Adenine Count

601407 bp

Thymine Count

603772 bp

Guanine Count

1026667 bp

Cytosine Count

1030723 bp

Genome Length

3262569 bp

Protein-coding Genes

2917 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophan synthase subunit alphaSAJA_00375Not AvailableNegative77645 - 7852630698.6
tryptophan synthase subunit alphaSAJA_00380Not AvailableNegative78523 - 7977944634.0
n-(5'-phosphoribosyl)anthranilate isomeraseSAJA_00385Not AvailableNegative79776 - 8040821850.9
trna pseudouridine synthase aSAJA_00390Not AvailableNegative80454 - 8125729737.0
hypothetical proteinSAJA_00395Not AvailableNegative81261 - 8298560360.8
3-isopropylmalate dehydrogenaseSAJA_00400Not AvailableNegative83187 - 8426338364.1
hypothetical proteinSAJA_00405Not AvailablePositive84480 - 845904140.31
3-isopropylmalate dehydratase small subunitSAJA_00410Not AvailableNegative84604 - 8524823994.3
trans-aconitate methyltransferaseSAJA_00415Not AvailableNegative85253 - 8604428351.3
isopropylmalate isomeraseSAJA_00420Not AvailableNegative86041 - 8745050623.3

Displaying genes 111 – 120 of 2990 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.