Salinisphaera japonica YTM-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Salinisphaerales

Family

Salinisphaeraceae

Genus

Salinisphaera

Description

Salinisphaera japonica YTM-1 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolism. This organism is characterized by its unique morphological and physiological traits, which align it with a group of microorganisms adept at utilizing oxygen for growth and energy production. The Gram-negative nature of S. japonica YTM-1 suggests a complex cell wall structure, typically associated with an outer membrane containing lipopolysaccharides, which may influence its interactions with the environment and other microbial communities. The optimal growth temperature of 25.0°C indicates that S. japonica YTM-1 is well-suited to moderate thermophilic conditions, potentially reflecting its adaptation to specific ecological niches such as marine environments or other temperate habitats. Aerobic organisms like S. japonica play a crucial role in the biogeochemical cycles, particularly in the degradation of organic matter and the cycling of carbon and nitrogen. Understanding the physiological characteristics of S. japonica YTM-1 not only contributes to the broader knowledge of microbial diversity but also offers insights into the ecological roles that such microorganisms may fulfill in their natural habitats. The ability of this bacterium to thrive under aerobic conditions could suggest its potential involvement in the maintenance of oxygen levels in specific ecosystems, highlighting the interconnectedness of microbial life and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderSalinisphaerales
FamilySalinisphaeraceae
GenusSalinisphaera
SpeciesSalinisphaera japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salinisphaera japonica YTM-1

Accession NumberAYKG00000000.1

Gene Summary

Adenine Count

601407 bp

Thymine Count

603772 bp

Guanine Count

1026667 bp

Cytosine Count

1030723 bp

Genome Length

3262569 bp

Protein-coding Genes

2917 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Lytic tail proteinSAJA_01975Not Available+408367 - 41033472588.4
Trna nucleotidyltransferaseSAJA_01980Not Available+410413 - 41163944984.9
short-chain dehydrogenaseSAJA_01985Not Available+411636 - 41236125816.6
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinaseSAJA_01990Not Available-412409 - 41290617690.9
dihydroneopterin triphosphate 2'-epimeraseSAJA_01995Not Available-412915 - 41326813124.0
Trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunitSAJA_02000Not Available-413298 - 41436236650.2
30s ribosomal protein s21SAJA_02005Not Available+414445 - 4146608690.63
Gp509SAJA_02010Not Available+414809 - 41525816688.8
Dna primaseSAJA_02015Not Available+415302 - 41707765215.2
Rna polymerase sigma factorSAJA_02020Not Available+417168 - 41900969768.6

Displaying genes 1 – 10 of 2990 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites