Comamonas thiooxydans strain DF2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Comamonas

Description

Comamonas thiooxydans strain DF2 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This strain has been categorized under the broader genus Comamonas, known for its metabolic versatility and ability to thrive in various environments. Comamonas thiooxydans strain DF2 has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability. The genomic data for Comamonas thiooxydans strain DF2 can be found under the accession number AWTP00000000.1. This accession provides a reference for researchers interested in studying the genetic makeup and functional capabilities of this strain. From an ecological perspective, the traits of Comamonas thiooxydans strain DF2 suggest it may play a significant role in sulfur oxidation processes, which are essential in biogeochemical cycles. The ability to oxidize sulfur compounds could contribute to nutrient cycling in various habitats, especially in environments rich in sulfur. This metabolic capability, combined with its motility and genetic adaptability, positions Comamonas thiooxydans strain DF2 as a potentially important player in ecosystems where sulfur compounds are prevalent.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusComamonas
SpeciesComamonas thiooxydans
Strainstrain DF2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactivated sludge; human gut; human intestinal tract
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Comamonas thiooxydans strain DF2 contig99, whole genome shotgun

Gene Summary

Adenine Count

1087055 bp

Thymine Count

1092981 bp

Guanine Count

1714477 bp

Cytosine Count

1713230 bp

Genome Length

5607743 bp

Protein-coding Genes

5129 genes

Non-Coding Genes

182 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rrna methyltransferaseP608_02850Not AvailableNegative598104 - 59889528133.9
ribonuclease hiiP608_02855Not AvailableNegative599024 - 59975525819.5
lipid-a-disaccharide synthaseP608_02860Not AvailableNegative599718 - 60091443474.8
udp-n-acetylglucosamine acyltransferaseP608_02865Not AvailableNegative600965 - 60175328010.6
3-hydroxyacyl-acp dehydrataseP608_02870Not AvailableNegative601769 - 60220916340.0
udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferaseP608_02875Not AvailableNegative602209 - 60321035150.0
omph/hlpa family outer membrane proteinP608_02880Not AvailableNegative603227 - 60373319065.5
membrane proteinP608_02885Not AvailableNegative603733 - 60604885858.8
zinc metalloproteaseP608_02890Not AvailableNegative606092 - 60746248790.6
1-deoxy-d-xylulose 5-phosphate reductoisomeraseP608_02895Not AvailableNegative607554 - 60873242457.2

Displaying genes 691 – 700 of 5311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
BacteremiaCausesPMC13579767
PeritonitisCausesPMC13579767
Wound infectionsCausesPMC13579767

Displaying health effects 1 – 3 of 3 in total