Comamonas thiooxydans strain DF2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Comamonas

Description

Comamonas thiooxydans strain DF2 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This strain has been categorized under the broader genus Comamonas, known for its metabolic versatility and ability to thrive in various environments. Comamonas thiooxydans strain DF2 has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability. The genomic data for Comamonas thiooxydans strain DF2 can be found under the accession number AWTP00000000.1. This accession provides a reference for researchers interested in studying the genetic makeup and functional capabilities of this strain. From an ecological perspective, the traits of Comamonas thiooxydans strain DF2 suggest it may play a significant role in sulfur oxidation processes, which are essential in biogeochemical cycles. The ability to oxidize sulfur compounds could contribute to nutrient cycling in various habitats, especially in environments rich in sulfur. This metabolic capability, combined with its motility and genetic adaptability, positions Comamonas thiooxydans strain DF2 as a potentially important player in ecosystems where sulfur compounds are prevalent.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusComamonas
SpeciesComamonas thiooxydans
Strainstrain DF2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactivated sludge; human gut; human intestinal tract
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Comamonas thiooxydans strain DF2 contig99, whole genome shotgun

Gene Summary

Adenine Count

1087055 bp

Thymine Count

1092981 bp

Guanine Count

1714477 bp

Cytosine Count

1713230 bp

Genome Length

5607743 bp

Protein-coding Genes

5129 genes

Non-Coding Genes

182 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cobyrinic acid a,c-diamide synthaseP608_06170Not AvailablePositive1283977 - 128478328726.0
hypothetical proteinP608_06175Not AvailablePositive1284836 - 128562129464.9
nadph-dependent fmn reductaseP608_06180Not AvailableNegative1285771 - 128632519615.0
lysr family transcriptional regulatorP608_06185Not AvailableNegative1286495 - 128690214180.8
quercetin 2,3-dioxygenaseP608_06190Not AvailableNegative1286972 - 128767325593.2
lysr family transcriptional regulatorP608_06195Not AvailablePositive1287795 - 128873334045.0
amine oxidaseP608_06200Not AvailablePositive1288867 - 128998240154.8
glutamyl-trna synthetaseP608_06205Not AvailablePositive1290024 - 129108238518.8
trna (guanine-n(7)-)-methyltransferaseP608_06210Not AvailablePositive1291112 - 129184627174.7
alanyl-trna synthetaseP608_06215Not AvailableNegative1292093 - 129471794052.8

Displaying genes 1321 – 1330 of 5311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
BacteremiaCausesPMC13579767
PeritonitisCausesPMC13579767
Wound infectionsCausesPMC13579767

Displaying health effects 1 – 3 of 3 in total