Pseudomonas simiae strain EGD-AQ6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas simiae strain EGD-AQ6 is a notable bacterium characterized by its single replicon, which suggests a streamlined genomic structure. This strain has been identified to interact with the model plant Arabidopsis, indicating its potential role in plant-microbe interactions. The genome of Pseudomonas simiae EGD-AQ6 is cataloged under the accession number AVQG00000000.1, providing a reference for further genomic studies and comparative analyses. The relationship between Pseudomonas simiae EGD-AQ6 and Arabidopsis may highlight significant ecological dynamics, as many Pseudomonas species are known for their plant growth-promoting properties and biocontrol capabilities. By engaging with host plants like Arabidopsis, this strain could influence plant health and resilience, particularly in terms of disease resistance or nutrient uptake. Overall, the study of Pseudomonas simiae strain EGD-AQ6 can contribute to our understanding of beneficial microbial interactions in agricultural systems, potentially offering insights into sustainable practices for enhancing crop productivity and health. Understanding how this strain operates within its ecological niche can inform future research on microbial applications in plant science and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas simiae
Strainstrain EGD-AQ6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas simiae strain EGD-AQ6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere; rhizosphere of wheat
Biotic relationshipNot Available
Host(s)Triticum aestivum, Arabidopsis, Brachypodium distachyon
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas simiae strain EGD-AQ6 contig9, whole genome shotgun

Gene Summary

Adenine Count

1217922 bp

Thymine Count

1185658 bp

Guanine Count

1816033 bp

Cytosine Count

1866642 bp

Genome Length

6086255 bp

Protein-coding Genes

5441 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinO204_26910Not AvailableNegative3353231 - 335361714234.9
pilus assembly protein pilzO204_26915Not AvailablePositive3353616 - 335405016132.0
phospho-2-dehydro-3-deoxyheptonate aldolaseO204_26920Not AvailablePositive3354181 - 335525739044.8
acetyltransferaseO204_26925Not AvailableNegative3355321 - 335560210569.5
major outer membrane lipoproteinO204_26930Not AvailablePositive3356215 - 33564668827.33
hypothetical proteinO204_26935Not AvailableNegative3356601 - 335756934155.9
hypothetical proteinO204_26940Not AvailableNegative3357642 - 335793511320.7
esteraseO204_26945Not AvailableNegative3357994 - 335859921154.8
abc transporter atp-binding proteinO204_26950Not AvailablePositive3358610 - 335929324538.4
abc transporter permeaseO204_26955Not AvailablePositive3359293 - 336180389872.7

Displaying genes 3221 – 3230 of 5658 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.