Pseudomonas simiae strain EGD-AQ6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas simiae strain EGD-AQ6 is a notable bacterium characterized by its single replicon, which suggests a streamlined genomic structure. This strain has been identified to interact with the model plant Arabidopsis, indicating its potential role in plant-microbe interactions. The genome of Pseudomonas simiae EGD-AQ6 is cataloged under the accession number AVQG00000000.1, providing a reference for further genomic studies and comparative analyses. The relationship between Pseudomonas simiae EGD-AQ6 and Arabidopsis may highlight significant ecological dynamics, as many Pseudomonas species are known for their plant growth-promoting properties and biocontrol capabilities. By engaging with host plants like Arabidopsis, this strain could influence plant health and resilience, particularly in terms of disease resistance or nutrient uptake. Overall, the study of Pseudomonas simiae strain EGD-AQ6 can contribute to our understanding of beneficial microbial interactions in agricultural systems, potentially offering insights into sustainable practices for enhancing crop productivity and health. Understanding how this strain operates within its ecological niche can inform future research on microbial applications in plant science and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas simiae
Strainstrain EGD-AQ6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas simiae strain EGD-AQ6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere; rhizosphere of wheat
Biotic relationshipNot Available
Host(s)Triticum aestivum, Arabidopsis, Brachypodium distachyon
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas simiae strain EGD-AQ6 contig9, whole genome shotgun

Gene Summary

Adenine Count

1217922 bp

Thymine Count

1185658 bp

Guanine Count

1816033 bp

Cytosine Count

1866642 bp

Genome Length

6086255 bp

Protein-coding Genes

5441 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-arabinose 5-phosphate isomeraseO204_03000Not AvailablePositive2516102 - 251707634321.9
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseO204_03005Not AvailablePositive2517077 - 251760118897.8
lipopolysaccharide abc transporter permease lptcO204_03010Not AvailablePositive2517610 - 251818221293.2
organic solvent tolerance protein ostaO204_03015Not AvailablePositive2518169 - 251870218805.5
lipopolysaccharide abc transporter atp-binding proteinO204_03020Not AvailablePositive2518702 - 251942726539.2
rna polymerase factor sigma-54O204_03025Not AvailablePositive2519613 - 252110656617.9
ribosome hibernation promoting factor hpfO204_03030Not AvailablePositive2521182 - 252148711554.0
pts fructose transporter subunit iiaO204_03035Not AvailablePositive2521498 - 252196216795.4
glmz(srna)-inactivating ntpaseO204_03040Not AvailablePositive2521965 - 252282232102.6
phosphocarrier protein hprO204_03045Not AvailablePositive2522839 - 25231119664.87

Displaying genes 2441 – 2450 of 5658 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.