Cedecea davisae DSM 4568

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Cedecea

Description

Cedecea davisae DSM 4568 is a Gram-negative bacterium that exhibits an aerobic mode of respiration. This trait indicates that it requires oxygen for its metabolic processes, which is a significant characteristic that influences its ecological niche and interactions within microbial communities. Genomic information reveals that C. davisae has a single replicon, suggesting a streamlined genomic architecture that may relate to its adaptability in various environments. Its accession number, ATDT00000000.1, provides a reference for further genomic studies and facilitates research on its genetic attributes and potential applications. The aerobic nature of C. davisae implies that it may thrive in oxygen-rich environments, which could include soil, water, or even within specific host organisms. This bacterium's metabolic capabilities may enable it to participate in biogeochemical cycles, particularly those involving nitrogen or carbon, contributing to nutrient cycling in its habitat. Overall, Cedecea davisae DSM 4568 represents an interesting subject for further investigation within microbial ecology, particularly concerning its role in aerobic environments and its potential interactions with other microorganisms. Understanding its ecological role could provide insights into the dynamics of microbial communities and their contributions to ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCedecea
SpeciesCedecea davisae
StrainDSM 4568

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Cedecea davisae DSM 4568
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cedecea davisae DSM 4568 C_davisaeHMPREF0201-1.0_Cont3.1, whole

Gene Summary

Adenine Count

1110131 bp

Thymine Count

1106000 bp

Guanine Count

1317108 bp

Cytosine Count

1320642 bp

Genome Length

4853881 bp

Protein-coding Genes

4744 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Head completion/stabilization proteinHMPREF0201_03600Not AvailableNegative3571946 - 357239816499.3
Putative terminase endonuclease subunitHMPREF0201_03601Not AvailableNegative3572495 - 357320226700.7
Capsid proteinHMPREF0201_03602Not AvailableNegative3573212 - 357425538561.0
Capsid-scaffolding proteinHMPREF0201_03603Not AvailableNegative3574265 - 357513432401.9
Putative terminase atpase subunitHMPREF0201_03604Not AvailablePositive3575324 - 357709667856.7
Phage portal proteinHMPREF0201_03605Not AvailablePositive3577084 - 357812738704.7
Hypothetical proteinHMPREF0201_03606Not AvailablePositive3578189 - 35784499307.36
Hypothetical proteinHMPREF0201_03607Not AvailableNegative3578470 - 3581124101145.0
Hypothetical proteinHMPREF0201_03608Not AvailableNegative3581165 - 35813838763.75
Putative exonucleaseHMPREF0201_03609Not AvailableNegative3581386 - 358206625884.6

Displaying genes 61 – 70 of 4905 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

708 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 708 metabolites

Health Effects

No health effects information available for this bacterium.