Sphingobacterium paucimobilis HER1398

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium paucimobilis HER1398 is a rod-shaped bacterium characterized by its single replicon, which is an important aspect of its genomic structure. The accession number for this strain is ATDL00000000.1, indicating that it has been cataloged in a biological database for reference and study. As a member of the Sphingobacterium genus, this bacterium is likely to be involved in various ecological processes, particularly in soil and aquatic environments where it may contribute to the degradation of organic matter. The rod shape of Sphingobacterium paucimobilis HER1398 suggests that it may possess specific adaptations for motility and interactions with its environment, although the extent of its mobility is not defined in the given traits. Understanding the characteristics of Sphingobacterium paucimobilis HER1398 can provide insights into its ecological roles, particularly in nutrient cycling and potential applications in bioremediation. The single replicon may also suggest a streamlined genomic organization, allowing it to adapt efficiently to its habitat. Overall, the traits of Sphingobacterium paucimobilis HER1398 highlight its relevance in microbiological studies and its potential significance in ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium paucimobilis
StrainHER1398

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium paucimobilis HER1398
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium paucimobilis HER1398


Gene Summary

Adenine Count

1524240 bp

Thymine Count

1507726 bp

Guanine Count

1032844 bp

Cytosine Count

1061549 bp

Genome Length

5126359 bp

Protein-coding Genes

4346 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive44 - 155Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive253 - 3135Not Available
hypothetical proteinM472_21550Not AvailablePositive543 - 82710511.6
5s ribosomal rnaNot AvailableNot AvailablePositive1398 - 1509Not Available
hypothetical proteinM472_21555Not AvailableNegative905 - 277073151.1
hypothetical proteinM472_21560Not AvailableNegative2777 - 330421058.2
hypothetical proteinM472_21565Not AvailablePositive3535 - 405320020.0
16s ribosomal rnaNot AvailableNot AvailablePositive3570 - 5106Not Available
hypothetical proteinM472_21570Not AvailableNegative4132 - 42815763.25
hypothetical proteinM472_21575Not AvailablePositive4705 - 507614043.8

Displaying genes 1 – 10 of 4417 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

427 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 427 metabolites

Health Effects

No health effects information available for this bacterium.