Agrobacterium sp. D14

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. D14 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This organism has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in various environments. The accession number for this strain is ASXX00000000.1, which serves as a reference for genomic and taxonomic studies. As a member of the Agrobacterium genus, D14 is likely involved in interactions with plants, particularly in the context of horizontal gene transfer. Members of this genus are known for their ability to transfer DNA to plant cells, a trait that has significant implications in agricultural biotechnology. This feature underlines the ecological role of Agrobacterium sp. D14 in influencing plant health and development. The ecological insight derived from the traits of Agrobacterium sp. D14 suggests its potential role in the rhizosphere, where it may engage in beneficial interactions with plants. Through its motility and genetic capabilities, this bacterium could contribute to the dynamics of microbial communities in soil, influencing nutrient cycling and plant growth. Understanding the characteristics of Agrobacterium sp. D14 enhances our knowledge of its biological functions and its potential applications in agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. D14
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. D14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. D14 contig8, whole genome shotgun sequence.

Gene Summary

Adenine Count

1116884 bp

Thymine Count

1109081 bp

Guanine Count

1649440 bp

Cytosine Count

1666091 bp

Genome Length

5541496 bp

Protein-coding Genes

5173 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acetyl-coa acetyltransferaseL901_24760Not AvailableNegative3361002 - 336220741624.0
3-oxoadipate coa-transferase subunit bL901_24765Not AvailableNegative3362218 - 336291324804.7
3-oxoadipate coa-transferase subunit aL901_24770Not AvailableNegative3362910 - 336361724882.0
iclr family transcriptional regulatorL901_24775Not AvailablePositive3363715 - 336451529166.9
arac family transcriptional regulatorL901_24780Not AvailableNegative3364485 - 336538433480.5
4-hydroxybenzoate 3-monooxygenaseL901_24785Not AvailablePositive3365525 - 336669743833.1
lysr family transcriptional regulatorL901_24790Not AvailableNegative3366816 - 336775133501.9
3-oxoadipate enol-lactonaseL901_24795Not AvailablePositive3367846 - 336864328406.0
4-carboxymuconolactone decarboxylaseL901_24800Not AvailablePositive3368647 - 336906615221.0
protocatechuate 3,4-dioxygenase subunit betaL901_24805Not AvailablePositive3369063 - 336980327783.4

Displaying genes 3171 – 3180 of 5232 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.