Agrobacterium sp. D14

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. D14 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This organism has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in various environments. The accession number for this strain is ASXX00000000.1, which serves as a reference for genomic and taxonomic studies. As a member of the Agrobacterium genus, D14 is likely involved in interactions with plants, particularly in the context of horizontal gene transfer. Members of this genus are known for their ability to transfer DNA to plant cells, a trait that has significant implications in agricultural biotechnology. This feature underlines the ecological role of Agrobacterium sp. D14 in influencing plant health and development. The ecological insight derived from the traits of Agrobacterium sp. D14 suggests its potential role in the rhizosphere, where it may engage in beneficial interactions with plants. Through its motility and genetic capabilities, this bacterium could contribute to the dynamics of microbial communities in soil, influencing nutrient cycling and plant growth. Understanding the characteristics of Agrobacterium sp. D14 enhances our knowledge of its biological functions and its potential applications in agriculture and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. D14
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. D14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. D14 contig8, whole genome shotgun sequence.

Gene Summary

Adenine Count

1116884 bp

Thymine Count

1109081 bp

Guanine Count

1649440 bp

Cytosine Count

1666091 bp

Genome Length

5541496 bp

Protein-coding Genes

5173 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-methyl-l-tryptophan oxidaseL901_21320Not AvailablePositive2369469 - 237065942368.1
hypothetical proteinL901_21325Not AvailablePositive2371229 - 237150710032.9
hypothetical proteinL901_21330Not AvailableNegative2371729 - 23719417843.5
cell division protein mrazL901_21335Not AvailablePositive2372381 - 237282116143.3
16s rrna methyltransferaseL901_21340Not AvailablePositive2372836 - 237386136292.6
hypothetical proteinL901_21345Not AvailablePositive2373863 - 237441719705.8
cell division proteinL901_21350Not AvailablePositive2374417 - 237615962914.6
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseL901_21355Not AvailablePositive2376256 - 237768649900.7
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseL901_21360Not AvailablePositive2377710 - 237911649584.7
phospho-n-acetylmuramoyl-pentapeptide- transferaseL901_21365Not AvailablePositive2379140 - 238024039157.1

Displaying genes 2281 – 2290 of 5232 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.