Pseudomonas plecoglossicida NB2011

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas plecoglossicida NB2011 is a significant bacterial strain characterized by a single replicon, which indicates a streamlined genetic structure that may facilitate efficient replication and adaptation. The strain is cataloged under the accession number ASJX00000000.1, providing a reference point for researchers interested in its genomic features and potential applications. This bacterium is primarily known for its association with aquatic environments, where it can impact fish health. The ecological role of Pseudomonas plecoglossicida NB2011 is particularly noteworthy, as it has been implicated in diseases affecting fish species, which can have broader implications for aquaculture and natural ecosystems. Understanding the genetic makeup and behavior of this strain is critical for developing strategies to manage its impact on fish populations and overall aquatic health. The presence of a single replicon suggests that Pseudomonas plecoglossicida NB2011 may possess a relatively uncomplicated genomic architecture, which can be advantageous for its survival in fluctuating environments. This simplicity may enable rapid responses to environmental changes, thereby influencing its pathogenicity and interactions with host organisms. Insights into the biology of Pseudomonas plecoglossicida NB2011 can therefore inform both ecological studies and practical approaches to mitigate its effects in aquaculture settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas plecoglossicida
StrainNB2011

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas plecoglossicida NB2011
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas plecoglossicida NB2011 contig87, whole genome shotgun

Gene Summary

Adenine Count

1011467 bp

Thymine Count

1002252 bp

Guanine Count

1691816 bp

Cytosine Count

1707733 bp

Genome Length

5413273 bp

Protein-coding Genes

4850 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease hiiL321_06686Not AvailableNegative1423298 - 142392122202.1
lipid-a-disaccharide synthaseL321_06691Not AvailableNegative1423923 - 142505041124.7
udp-n-acetylglucosamine acyltransferaseL321_06696Not AvailableNegative1425052 - 142582828264.8
(3r)-hydroxymyristoyl-acp dehydrataseL321_06701Not AvailableNegative1425825 - 142626516614.3
udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferaseL321_06706Not AvailableNegative1426380 - 142743536512.8
outer membrane chaperone skpL321_06711Not AvailableNegative1427437 - 142794018735.9
surface antigen family outer membrane proteinL321_06716Not AvailableNegative1427985 - 143033386301.4
putative zinc metalloproteaseL321_06721Not AvailableNegative1430404 - 143175647993.7
1-deoxy-d-xylulose 5-phosphate reductoisomeraseL321_06726Not AvailableNegative1431799 - 143298942357.2
phosphatidate cytidylyltransferaseL321_06731Not AvailableNegative1432986 - 143380129170.9

Displaying genes 1391 – 1400 of 4951 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.