Pseudomonas plecoglossicida NB2011

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas plecoglossicida NB2011 is a significant bacterial strain characterized by a single replicon, which indicates a streamlined genetic structure that may facilitate efficient replication and adaptation. The strain is cataloged under the accession number ASJX00000000.1, providing a reference point for researchers interested in its genomic features and potential applications. This bacterium is primarily known for its association with aquatic environments, where it can impact fish health. The ecological role of Pseudomonas plecoglossicida NB2011 is particularly noteworthy, as it has been implicated in diseases affecting fish species, which can have broader implications for aquaculture and natural ecosystems. Understanding the genetic makeup and behavior of this strain is critical for developing strategies to manage its impact on fish populations and overall aquatic health. The presence of a single replicon suggests that Pseudomonas plecoglossicida NB2011 may possess a relatively uncomplicated genomic architecture, which can be advantageous for its survival in fluctuating environments. This simplicity may enable rapid responses to environmental changes, thereby influencing its pathogenicity and interactions with host organisms. Insights into the biology of Pseudomonas plecoglossicida NB2011 can therefore inform both ecological studies and practical approaches to mitigate its effects in aquaculture settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas plecoglossicida
StrainNB2011

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas plecoglossicida NB2011
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas plecoglossicida NB2011 contig87, whole genome shotgun

Gene Summary

Adenine Count

1011467 bp

Thymine Count

1002252 bp

Guanine Count

1691816 bp

Cytosine Count

1707733 bp

Genome Length

5413273 bp

Protein-coding Genes

4850 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
asma family proteinL321_06189Not AvailableNegative1313620 - 131585779878.6
imidazoleglycerol-phosphate dehydrataseL321_06194Not AvailablePositive1316178 - 131677121923.3
imidazole glycerol phosphate synthase subunit hishL321_06199Not AvailablePositive1316772 - 131741023521.9
hypothetical proteinL321_06204Not AvailablePositive1317411 - 131767110062.0
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseL321_06209Not AvailablePositive1317699 - 131843625908.3
imidazole glycerol phosphate synthase subunit hisfL321_06214Not AvailablePositive1318447 - 131921727132.5
choline abc transporter atp-binding proteinL321_06219Not AvailableNegative1319254 - 132043243883.6
choline abc transporter permeaseL321_06224Not AvailableNegative1320429 - 132127430270.1
choline abc transporter periplasmic binding proteinL321_06229Not AvailableNegative1321359 - 132230634499.4
l-serine dehydrataseL321_06234Not AvailablePositive1322748 - 132412449233.1

Displaying genes 1291 – 1300 of 4951 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.