Thioclava atlantica strain 13D2W-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava atlantica strain 13D2W-2 is a Gram-negative bacterium characterized by its rod shape. This strain possesses a single replicon, which is significant for its genetic stability and replication dynamics. The complete genomic sequence of this strain is available under the accession number AQRC00000000.1, allowing for detailed genetic and functional studies. As a member of the genus Thioclava, this strain likely plays a role in sulfur cycling within its environment, although specific ecological functions are not detailed here. The traits of Thioclava atlantica suggest its adaptation to various ecological niches, particularly those involving sulfur-rich compounds, which are common in marine environments. The presence of a single replicon in strain 13D2W-2 may indicate a streamlined genomic organization, potentially enhancing its adaptability and survival under specific environmental conditions. Understanding the genomic structure and traits of Thioclava atlantica could provide insights into microbial interactions in marine ecosystems and their contributions to biogeochemical processes. This highlights the importance of studying such microorganisms to unravel their ecological roles and potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava atlantica
Strainstrain 13D2W-2

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava atlantica strain 13D2W-2 contig47, whole genome shotgun

Gene Summary

Adenine Count

683002 bp

Thymine Count

680085 bp

Guanine Count

1277573 bp

Cytosine Count

1287783 bp

Genome Length

3928443 bp

Protein-coding Genes

3755 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cmp/dcmp deaminase zinc-binding proteinDW2_14425Not AvailableNegative2982179 - 298264316359.5
hypothetical proteinDW2_14430Not AvailableNegative2982723 - 29829297311.72
cro/ci family transcriptional regulator -like proteinDW2_14435Not AvailablePositive2983128 - 298390127720.2
sugar abc transporter atpaseDW2_14440Not AvailablePositive2983898 - 298503740450.0
abc transporter substrate-binding proteinDW2_14445Not AvailablePositive2985041 - 298632446510.0
sn-glycerol-3-phosphate transport system permease protein ugpaDW2_14450Not AvailablePositive2986393 - 298726532709.8
binding-protein-dependent transport systems inner membrane componentDW2_14455Not AvailablePositive2987262 - 298807130198.3
xylose isomeraseDW2_14460Not AvailablePositive2988091 - 298890930294.5
phosphomethylpyrimidine synthase thicDW2_14465Not AvailablePositive2989268 - 299106166271.1
thiamine biosynthesis oxidoreductase thioDW2_14470Not AvailablePositive2991058 - 299200534170.1

Displaying genes 2901 – 2910 of 3815 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.