Thioclava atlantica strain 13D2W-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava atlantica strain 13D2W-2 is a Gram-negative bacterium characterized by its rod shape. This strain possesses a single replicon, which is significant for its genetic stability and replication dynamics. The complete genomic sequence of this strain is available under the accession number AQRC00000000.1, allowing for detailed genetic and functional studies. As a member of the genus Thioclava, this strain likely plays a role in sulfur cycling within its environment, although specific ecological functions are not detailed here. The traits of Thioclava atlantica suggest its adaptation to various ecological niches, particularly those involving sulfur-rich compounds, which are common in marine environments. The presence of a single replicon in strain 13D2W-2 may indicate a streamlined genomic organization, potentially enhancing its adaptability and survival under specific environmental conditions. Understanding the genomic structure and traits of Thioclava atlantica could provide insights into microbial interactions in marine ecosystems and their contributions to biogeochemical processes. This highlights the importance of studying such microorganisms to unravel their ecological roles and potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava atlantica
Strainstrain 13D2W-2

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava atlantica strain 13D2W-2 contig47, whole genome shotgun

Gene Summary

Adenine Count

683002 bp

Thymine Count

680085 bp

Guanine Count

1277573 bp

Cytosine Count

1287783 bp

Genome Length

3928443 bp

Protein-coding Genes

3755 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aldo/keto reductaseDW2_05375Not AvailablePositive1129377 - 113043239441.9
hydroxypyruvate isomeraseDW2_05380Not AvailableNegative1130452 - 113122228193.6
3-hydroxyisobutyrate dehydrogenaseDW2_05385Not AvailableNegative1131226 - 113209529489.3
hrp-dependent type iii effector proteinDW2_05390Not AvailablePositive1132354 - 113363143773.7
putative aldolaseDW2_05395Not AvailablePositive1133624 - 113426222882.3
beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenaseDW2_05400Not AvailablePositive1134290 - 113518331624.8
hypothetical proteinDW2_05405Not AvailablePositive1135390 - 113640935981.3
hypothetical proteinDW2_05410Not AvailableNegative1136417 - 113731630976.9
uracil phosphoribosyltransferaseDW2_05415Not AvailableNegative1137492 - 113812422960.3
phosphopentomutaseDW2_05420Not AvailableNegative1138136 - 113935342787.2

Displaying genes 1081 – 1090 of 3815 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.