Thioclava atlantica strain 13D2W-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava atlantica strain 13D2W-2 is a Gram-negative bacterium characterized by its rod shape. This strain possesses a single replicon, which is significant for its genetic stability and replication dynamics. The complete genomic sequence of this strain is available under the accession number AQRC00000000.1, allowing for detailed genetic and functional studies. As a member of the genus Thioclava, this strain likely plays a role in sulfur cycling within its environment, although specific ecological functions are not detailed here. The traits of Thioclava atlantica suggest its adaptation to various ecological niches, particularly those involving sulfur-rich compounds, which are common in marine environments. The presence of a single replicon in strain 13D2W-2 may indicate a streamlined genomic organization, potentially enhancing its adaptability and survival under specific environmental conditions. Understanding the genomic structure and traits of Thioclava atlantica could provide insights into microbial interactions in marine ecosystems and their contributions to biogeochemical processes. This highlights the importance of studying such microorganisms to unravel their ecological roles and potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava atlantica
Strainstrain 13D2W-2

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava atlantica strain 13D2W-2


Gene Summary

Adenine Count

683002 bp

Thymine Count

680085 bp

Guanine Count

1277573 bp

Cytosine Count

1287783 bp

Genome Length

3928443 bp

Protein-coding Genes

3755 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-4-dehydrorhamnose reductaseDW2_09191Not AvailableNegative1902467 - 190331229866.4
dtdp-glucose 4,6-dehydrataseDW2_09196Not AvailableNegative1903309 - 190434638141.1
dtdp-4-dehydrorhamnose 3,5-epimeraseDW2_09201Not AvailableNegative1904348 - 190491420474.0
Trna-proNot AvailableNot AvailablePositive1905019 - 1905095Not Available
hypothetical proteinDW2_09206Not AvailableNegative1905147 - 190613035036.0
3-isopropylmalate dehydrogenaseDW2_09211Not AvailableNegative1906257 - 190736039610.6
hypothetical proteinDW2_09216Not AvailablePositive1907576 - 190849634308.3
hypothetical proteinDW2_09221Not AvailableNegative1908577 - 190933527719.2
hypothetical proteinDW2_09226Not AvailableNegative1909675 - 191018717739.7
isopropylmalate isomerase small subunitDW2_09231Not AvailableNegative1910307 - 191091222485.8

Displaying genes 1851 – 1860 of 3815 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.