Thioclava atlantica strain 13D2W-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava atlantica strain 13D2W-2 is a Gram-negative bacterium characterized by its rod shape. This strain possesses a single replicon, which is significant for its genetic stability and replication dynamics. The complete genomic sequence of this strain is available under the accession number AQRC00000000.1, allowing for detailed genetic and functional studies. As a member of the genus Thioclava, this strain likely plays a role in sulfur cycling within its environment, although specific ecological functions are not detailed here. The traits of Thioclava atlantica suggest its adaptation to various ecological niches, particularly those involving sulfur-rich compounds, which are common in marine environments. The presence of a single replicon in strain 13D2W-2 may indicate a streamlined genomic organization, potentially enhancing its adaptability and survival under specific environmental conditions. Understanding the genomic structure and traits of Thioclava atlantica could provide insights into microbial interactions in marine ecosystems and their contributions to biogeochemical processes. This highlights the importance of studying such microorganisms to unravel their ecological roles and potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava atlantica
Strainstrain 13D2W-2

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava atlantica strain 13D2W-2


Gene Summary

Adenine Count

683002 bp

Thymine Count

680085 bp

Guanine Count

1277573 bp

Cytosine Count

1287783 bp

Genome Length

3928443 bp

Protein-coding Genes

3755 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sensor histidine kinaseDW2_08442Not AvailableNegative1749951 - 175128549163.1
metallo-beta-lactamaseDW2_08447Not AvailablePositive1751322 - 175219430781.5
Trna-asnNot AvailableNot AvailablePositive1752266 - 1752340Not Available
phage integrase family proteinDW2_08452Not AvailablePositive1752633 - 175425560342.0
putative transposaseDW2_08457Not AvailableNegative1754426 - 175522630660.4
is3/is911 insertion sequence transposaseDW2_08462Not AvailableNegative1755259 - 17553814895.11
methyltransferase type 11DW2_08467Not AvailableNegative1755775 - 175657828764.6
gntr family transcriptional regulatorDW2_08472Not AvailableNegative1756933 - 175772128573.2
inner membrane abc transporter permease protein yjffDW2_08477Not AvailableNegative1757667 - 175865934970.8
ribose abc transporter permeaseDW2_08482Not AvailableNegative1758656 - 175972337016.7

Displaying genes 1701 – 1710 of 3815 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.