Pandoraea sp. SD6-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea sp. SD6-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses a single replicon, indicating a streamlined genomic organization. The genomic sequence of Pandoraea sp. SD6-2 is available under the accession number AQOU00000000.1. The classification of Pandoraea within the Burkholderiaceae family suggests its potential ecological roles and interactions, particularly in environments that are nutrient-rich or subject to contamination. Members of the Pandoraea genus are often isolated from various ecological niches, including soil and water, where they may contribute to biogeochemical cycles or exhibit bioremediation capabilities. Understanding the specific traits of Pandoraea sp. SD6-2 can provide insights into its ecological significance and potential applications in environmental microbiology. Its Gram-negative nature and rod shape may influence its survival and adaptability in diverse habitats, as these traits are often associated with resistance to certain environmental stresses and antimicrobial agents. Overall, the study of Pandoraea sp. SD6-2 could shed light on the complex interactions within microbial communities and its potential utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea sp. SD6-2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea sp. SD6-2 contig32, whole genome shotgun sequence.

Gene Summary

Adenine Count

1080386 bp

Thymine Count

1081183 bp

Guanine Count

1797483 bp

Cytosine Count

1809195 bp

Genome Length

5768247 bp

Protein-coding Genes

5054 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cyclohexanecarboxyl-coa dehydrogenaseC266_16070Not AvailableNegative3556044 - 355719841950.6
naphthoate synthaseC266_16075Not AvailableNegative3557214 - 355799628700.3
nad-dependent epimerase/dehydrataseC266_16080Not AvailableNegative3558064 - 355883126095.2
marr family transcriptional regulatorC266_16085Not AvailablePositive3559013 - 355951318938.5
marr family transcriptional regulator, involved in virulenceC266_16090Not AvailablePositive3559709 - 356018217160.9
inner membrane efflux transporterC266_16095Not AvailablePositive3560186 - 356219573082.7
hypothetical proteinC266_16100Not AvailablePositive3562192 - 35624017586.76
secretion protein hlyd familyC266_16105Not AvailablePositive3562398 - 356336035069.0
nodt family rnd efflux system outer membrane lipoproteinC266_16110Not AvailablePositive3563378 - 356487752691.9
hypothetical proteinC266_16115Not AvailableNegative3565101 - 35653709460.29

Displaying genes 3231 – 3240 of 5223 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.