Pandoraea sp. SD6-2

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea sp. SD6-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses a single replicon, indicating a streamlined genomic organization. The genomic sequence of Pandoraea sp. SD6-2 is available under the accession number AQOU00000000.1. The classification of Pandoraea within the Burkholderiaceae family suggests its potential ecological roles and interactions, particularly in environments that are nutrient-rich or subject to contamination. Members of the Pandoraea genus are often isolated from various ecological niches, including soil and water, where they may contribute to biogeochemical cycles or exhibit bioremediation capabilities. Understanding the specific traits of Pandoraea sp. SD6-2 can provide insights into its ecological significance and potential applications in environmental microbiology. Its Gram-negative nature and rod shape may influence its survival and adaptability in diverse habitats, as these traits are often associated with resistance to certain environmental stresses and antimicrobial agents. Overall, the study of Pandoraea sp. SD6-2 could shed light on the complex interactions within microbial communities and its potential utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea sp. SD6-2
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea sp. SD6-2 contig32, whole genome shotgun sequence.

Gene Summary

Adenine Count

1080386 bp

Thymine Count

1081183 bp

Guanine Count

1797483 bp

Cytosine Count

1809195 bp

Genome Length

5768247 bp

Protein-coding Genes

5054 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
family 3 extracellular solute-binding proteinC266_08882Not AvailablePositive1951988 - 195289033111.9
effector protein yopjC266_08887Not AvailablePositive1953032 - 195408138224.0
multifunctional trna nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphataseC266_08892Not AvailableNegative1954138 - 195539446092.2
glutathione s-transferase domain-containing proteinC266_08897Not AvailableNegative1955391 - 195603524340.1
nad-dependent epimerase/dehydrataseC266_08902Not AvailableNegative1956099 - 195704933909.9
lytic transglycosylase catalyticC266_08907Not AvailableNegative1957089 - 195909573888.6
5-formyltetrahydrofolate cyclo-ligaseC266_08912Not AvailablePositive1959180 - 195977021265.6
allophanate hydrolase subunit 1C266_08917Not AvailablePositive1959774 - 196042723078.7
allophanate hydrolase, subunit2 (ahs2)C266_08922Not AvailablePositive1960424 - 196143436420.8
lamb/ycsf family proteinC266_08927Not AvailablePositive1961489 - 196222926423.6

Displaying genes 1921 – 1930 of 5223 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.