Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03793 | Not Available | Negative | 4318415 - 4319023 | 23818.7 |
| hypothetical protein | HMPREF1534_03794 | Not Available | Negative | 4319199 - 4322450 | 121387.0 |
| hypothetical protein | HMPREF1534_03795 | Not Available | Positive | 4322615 - 4324147 | 58191.0 |
| hypothetical protein | HMPREF1534_03796 | Not Available | Positive | 4324812 - 4326407 | 59607.9 |
| hypothetical protein | HMPREF1534_03797 | Not Available | Positive | 4326522 - 4327493 | 37235.1 |
| hypothetical protein | HMPREF1534_03798 | Not Available | Positive | 4327498 - 4328718 | 45678.5 |
| hypothetical protein | HMPREF1534_03799 | Not Available | Negative | 4328725 - 4328994 | 10633.6 |
| hypothetical protein | HMPREF1534_03800 | Not Available | Positive | 4329075 - 4329992 | 35725.2 |
| succinate coa transferase | HMPREF1534_03801 | Not Available | Negative | 4330245 - 4331738 | 54063.8 |
| hypothetical protein | HMPREF1534_03802 | Not Available | Negative | 4331778 - 4332128 | 13465.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


