Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03723 | Not Available | Positive | 4237802 - 4238185 | 14740.4 |
| hypothetical protein | HMPREF1534_03724 | Not Available | Positive | 4238511 - 4239896 | 54046.0 |
| hypothetical protein | HMPREF1534_03725 | Not Available | Positive | 4239995 - 4242178 | 82461.9 |
| phosphoribosylamine-glycine ligase | HMPREF1534_03726 | Not Available | Positive | 4242197 - 4243465 | 45610.0 |
| hypothetical protein | HMPREF1534_03727 | Not Available | Positive | 4243492 - 4244427 | 35671.4 |
| hypothetical protein | HMPREF1534_03728 | Not Available | Positive | 4244403 - 4244870 | 16950.3 |
| hypothetical protein | HMPREF1534_03729 | Not Available | Positive | 4244875 - 4245552 | 25601.5 |
| hypothetical protein | HMPREF1534_03730 | Not Available | Positive | 4245572 - 4246429 | 32126.2 |
| hypothetical protein | HMPREF1534_03731 | Not Available | Positive | 4246438 - 4247232 | 29660.8 |
| hypothetical protein | HMPREF1534_03732 | Not Available | Negative | 4247337 - 4249994 | 99564.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


