Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03493 | Not Available | Positive | 3982741 - 3983874 | 42121.3 |
| hypothetical protein | HMPREF1534_03494 | Not Available | Positive | 3983916 - 3984311 | 15827.1 |
| conjugative transposon trak protein | HMPREF1534_03495 | Not Available | Positive | 3984315 - 3984929 | 23695.9 |
| hypothetical protein | HMPREF1534_03496 | Not Available | Positive | 3984942 - 3985322 | 14846.9 |
| hypothetical protein | HMPREF1534_03497 | Not Available | Positive | 3985333 - 3985815 | 18464.3 |
| conjugative transposon tram protein | HMPREF1534_03498 | Not Available | Positive | 3985826 - 3986974 | 42363.9 |
| hypothetical protein | HMPREF1534_03499 | Not Available | Positive | 3986986 - 3987789 | 30945.5 |
| conjugative transposon tran protein | HMPREF1534_03500 | Not Available | Positive | 3987818 - 3988669 | 32317.8 |
| hypothetical protein | HMPREF1534_03501 | Not Available | Positive | 3988666 - 3989190 | 19752.1 |
| hypothetical protein | HMPREF1534_03502 | Not Available | Positive | 3989217 - 3989873 | 23909.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


