Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03283 | Not Available | Negative | 3750432 - 3751424 | 36790.9 |
| argininosuccinate lyase | HMPREF1534_03284 | Not Available | Negative | 3751436 - 3752776 | 50471.3 |
| hypothetical protein | HMPREF1534_03285 | Not Available | Negative | 3752789 - 3753214 | 16368.1 |
| orotate phosphoribosyltransferase | HMPREF1534_03286 | Not Available | Negative | 3753307 - 3753945 | 23339.3 |
| comf family protein | HMPREF1534_03287 | Not Available | Negative | 3754107 - 3754808 | 26704.4 |
| hypothetical protein | HMPREF1534_03288 | Not Available | Negative | 3754783 - 3755268 | 18732.6 |
| protein-(glutamine-n5) methyltransferase, release factor-specific | HMPREF1534_03289 | Not Available | Negative | 3755265 - 3756101 | 31720.1 |
| riboflavin biosynthesis protein ribd | HMPREF1534_03290 | Not Available | Positive | 3756148 - 3757209 | 39793.1 |
| hypothetical protein | HMPREF1534_03291 | Not Available | Positive | 3757323 - 3758729 | 52666.6 |
| undecaprenyl pyrophosphate synthase | HMPREF1534_03292 | Not Available | Positive | 3758744 - 3759475 | 28063.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


