Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03243 | Not Available | Negative | 3701900 - 3703588 | 63174.1 |
| hypothetical protein | HMPREF1534_03244 | Not Available | Negative | 3703674 - 3705365 | 63013.0 |
| hypothetical protein | HMPREF1534_03245 | Not Available | Positive | 3705457 - 3707121 | 64041.6 |
| rna polymerase sigma-54 factor | HMPREF1534_03246 | Not Available | Positive | 3707217 - 3708692 | 56365.4 |
| hypothetical protein | HMPREF1534_03247 | Not Available | Positive | 3708697 - 3709353 | 24591.6 |
| glycine cleavage system h protein | HMPREF1534_03248 | Not Available | Positive | 3709394 - 3709774 | 14092.4 |
| phosphoribosylaminoimidazole carboxylase, catalytic subunit | HMPREF1534_03249 | Not Available | Positive | 3709794 - 3710303 | 17715.9 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | HMPREF1534_03250 | Not Available | Positive | 3710447 - 3712294 | 68542.1 |
| glutaminase a | HMPREF1534_03251 | Not Available | Positive | 3712307 - 3713221 | 33890.6 |
| hypothetical protein | HMPREF1534_03252 | Not Available | Negative | 3713490 - 3713648 | 6018.22 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


