Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03223 | Not Available | Positive | 3679131 - 3679844 | 26091.9 |
| arsenate reductase (thioredoxin) | HMPREF1534_03224 | Not Available | Positive | 3679841 - 3680290 | 16694.0 |
| hypothetical protein | HMPREF1534_03225 | Not Available | Positive | 3680336 - 3681304 | 35826.1 |
| hypothetical protein | HMPREF1534_03226 | Not Available | Positive | 3681322 - 3682182 | 34185.7 |
| hypothetical protein | HMPREF1534_03227 | Not Available | Negative | 3682564 - 3683790 | 47229.4 |
| Trna-lys | Not Available | Not Available | Positive | 3684061 - 3684133 | Not Available |
| hypothetical protein | HMPREF1534_03229 | Not Available | Negative | 3684249 - 3685361 | 41669.7 |
| thymidine kinase | HMPREF1534_03230 | Not Available | Negative | 3685374 - 3686096 | 27033.8 |
| hypothetical protein | HMPREF1534_03231 | Not Available | Positive | 3686173 - 3686856 | 25360.8 |
| hypothetical protein | HMPREF1534_03232 | Not Available | Positive | 3686885 - 3687733 | 31547.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


