Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03173 | Not Available | Positive | 3611277 - 3612233 | 35422.2 |
| hypothetical protein | HMPREF1534_03174 | Not Available | Positive | 3612895 - 3613401 | 19793.8 |
| hypothetical protein | HMPREF1534_03175 | Not Available | Positive | 3613436 - 3616075 | 93465.0 |
| nadh-quinone oxidoreductase subunit n | HMPREF1534_03176 | Not Available | Negative | 3616799 - 3618220 | 52107.2 |
| proton-translocating nadh-quinone oxidoreductase, chain m | HMPREF1534_03177 | Not Available | Negative | 3618230 - 3619711 | 53815.7 |
| proton-translocating nadh-quinone oxidoreductase, chain l | HMPREF1534_03178 | Not Available | Negative | 3619740 - 3621626 | 69401.2 |
| hypothetical protein | HMPREF1534_03179 | Not Available | Negative | 3621629 - 3621937 | 11709.6 |
| hypothetical protein | HMPREF1534_03180 | Not Available | Negative | 3621946 - 3622449 | 18172.2 |
| nadh-quinone oxidoreductase, chain i | HMPREF1534_03181 | Not Available | Negative | 3622466 - 3622918 | 16880.4 |
| nadh-quinone oxidoreductase subunit h | HMPREF1534_03182 | Not Available | Negative | 3622918 - 3623994 | 40308.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


