Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03122 | Not Available | Negative | 3539672 - 3541453 | 68575.3 |
| hypothetical protein | HMPREF1534_03123 | Not Available | Negative | 3541542 - 3541886 | 13555.6 |
| hypothetical protein | HMPREF1534_03124 | Not Available | Negative | 3541888 - 3542256 | 14084.1 |
| beta-lactamase | HMPREF1534_03125 | Not Available | Positive | 3542602 - 3543567 | 35378.6 |
| hypothetical protein | HMPREF1534_03126 | Not Available | Negative | 3543660 - 3545063 | 54960.8 |
| hypothetical protein | HMPREF1534_03127 | Not Available | Negative | 3545346 - 3546461 | 42693.9 |
| hypothetical protein | HMPREF1534_03128 | Not Available | Negative | 3546465 - 3547562 | 40866.6 |
| excisionase family dna binding domain-containing protein | HMPREF1534_03129 | Not Available | Negative | 3547568 - 3547942 | 14142.9 |
| hypothetical protein | HMPREF1534_03130 | Not Available | Negative | 3548142 - 3548999 | 33369.8 |
| hypothetical protein | HMPREF1534_03131 | Not Available | Negative | 3549247 - 3550365 | 43474.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


