Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03112 | Not Available | Positive | 3532158 - 3532388 | 7951.79 |
| hypothetical protein | HMPREF1534_03113 | Not Available | Positive | 3532514 - 3533611 | 42152.8 |
| hypothetical protein | HMPREF1534_03114 | Not Available | Positive | 3533694 - 3533846 | 5593.86 |
| hypothetical protein | HMPREF1534_03115 | Not Available | Positive | 3533976 - 3534344 | 14166.2 |
| hypothetical protein | HMPREF1534_03116 | Not Available | Positive | 3534366 - 3534884 | 20258.0 |
| glycosyltransferase, gg-bacteroidales peptide system protein | HMPREF1534_03117 | Not Available | Positive | 3534853 - 3536070 | 47064.3 |
| hypothetical protein | HMPREF1534_03118 | Not Available | Positive | 3536120 - 3536371 | 8753.62 |
| hypothetical protein | HMPREF1534_03119 | Not Available | Positive | 3536471 - 3537691 | 46798.8 |
| gg-bacteroidales family radical sam peptide maturase | HMPREF1534_03120 | Not Available | Positive | 3537696 - 3539015 | 52345.8 |
| hypothetical protein | HMPREF1534_03121 | Not Available | Negative | 3539366 - 3539584 | 8777.63 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


