Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03092 | Not Available | Negative | 3508529 - 3509611 | 39980.3 |
| yjef family domain-containing protein | HMPREF1534_03093 | Not Available | Negative | 3509618 - 3511153 | 56054.6 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03094 | Not Available | Positive | 3511628 - 3514657 | 112163.0 |
| hypothetical protein | HMPREF1534_03095 | Not Available | Positive | 3514683 - 3516470 | 68313.2 |
| hypothetical protein | HMPREF1534_03096 | Not Available | Positive | 3516507 - 3517346 | 31285.4 |
| hypoxanthine phosphoribosyltransferase | HMPREF1534_03097 | Not Available | Positive | 3517508 - 3518044 | 20137.5 |
| adenylate kinase | HMPREF1534_03098 | Not Available | Positive | 3518085 - 3518657 | 21020.2 |
| gtpase obg | HMPREF1534_03099 | Not Available | Positive | 3518886 - 3520064 | 43963.0 |
| hypothetical protein | HMPREF1534_03100 | Not Available | Positive | 3520061 - 3520855 | 29547.6 |
| hypothetical protein | HMPREF1534_03101 | Not Available | Positive | 3520894 - 3521553 | 24220.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


