Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l31 type b | HMPREF1534_03082 | Not Available | Negative | 3496216 - 3496470 | 9655.66 |
| fructose-1,6-bisphosphate aldolase, class ii | HMPREF1534_03083 | Not Available | Positive | 3496797 - 3497801 | 36460.6 |
| hypothetical protein | HMPREF1534_03084 | Not Available | Negative | 3497865 - 3498701 | 32383.9 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_03085 | Not Available | Positive | 3498850 - 3499965 | 39946.1 |
| hydrophobe/amphiphile efflux-1 (hae1) family rnd transporter | HMPREF1534_03086 | Not Available | Positive | 3499974 - 3503189 | 117245.0 |
| nodt family efflux transporter, outer membrane factor (omf) lipoprotein | HMPREF1534_03087 | Not Available | Positive | 3503186 - 3504559 | 50633.5 |
| hypothetical protein | HMPREF1534_03088 | Not Available | Negative | 3504633 - 3505883 | 46011.5 |
| hypothetical protein | HMPREF1534_03089 | Not Available | Negative | 3505956 - 3506507 | 19814.5 |
| hypothetical protein | HMPREF1534_03090 | Not Available | Positive | 3506545 - 3508062 | 56525.4 |
| hypothetical protein | HMPREF1534_03091 | Not Available | Negative | 3508155 - 3508265 | 3844.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


