Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic ribonucleoside-triphosphate reductase | HMPREF1534_03062 | Not Available | Negative | 3469280 - 3471556 | 86037.6 |
| hemolysin iii family channel protein | HMPREF1534_03063 | Not Available | Negative | 3471852 - 3472490 | 24199.9 |
| hypothetical protein | HMPREF1534_03064 | Not Available | Negative | 3472496 - 3474031 | 58902.6 |
| hypothetical protein | HMPREF1534_03065 | Not Available | Negative | 3474197 - 3474505 | 11149.8 |
| hypothetical protein | HMPREF1534_03066 | Not Available | Positive | 3474645 - 3474758 | 4568.86 |
| hypothetical protein | HMPREF1534_03067 | Not Available | Positive | 3474844 - 3475674 | 31050.5 |
| holliday junction atp-dependent dna helicase ruva | HMPREF1534_03068 | Not Available | Negative | 3475750 - 3476343 | 21148.8 |
| diaminopimelate dehydrogenase | HMPREF1534_03069 | Not Available | Positive | 3476518 - 3477417 | 32360.0 |
| prolipoprotein diacylglyceryl transferase | HMPREF1534_03070 | Not Available | Positive | 3477525 - 3478331 | 31235.6 |
| hypothetical protein | HMPREF1534_03071 | Not Available | Positive | 3478493 - 3480562 | 75975.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


