Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guanylate kinase | HMPREF1534_03052 | Not Available | Negative | 3459714 - 3460283 | 21307.4 |
| tigr00255 family protein | HMPREF1534_03053 | Not Available | Negative | 3460284 - 3461186 | 34684.6 |
| universal bacterial protein yeaz | HMPREF1534_03054 | Not Available | Positive | 3461231 - 3461950 | 26595.4 |
| hypothetical protein | HMPREF1534_03055 | Not Available | Positive | 3461981 - 3462604 | 24774.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | HMPREF1534_03056 | Not Available | Positive | 3462625 - 3463929 | 47300.8 |
| ribosome maturation factor rimm | HMPREF1534_03057 | Not Available | Positive | 3463898 - 3464452 | 21356.6 |
| hypothetical protein | HMPREF1534_03058 | Not Available | Positive | 3464485 - 3465342 | 32135.7 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | HMPREF1534_03059 | Not Available | Positive | 3465349 - 3466503 | 42489.5 |
| rip metalloprotease rsep | HMPREF1534_03060 | Not Available | Positive | 3466522 - 3467859 | 51081.5 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | HMPREF1534_03061 | Not Available | Negative | 3468813 - 3469271 | 17121.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


