Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03042 | Not Available | Positive | 3454392 - 3455009 | 23485.2 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | HMPREF1534_03043 | Not Available | Positive | 3455006 - 3455482 | 17259.1 |
| 1,4-dihydroxy-2-naphthoate octaprenyltransferase | HMPREF1534_03044 | Not Available | Negative | 3455554 - 3456444 | 32839.2 |
| hypothetical protein | HMPREF1534_03045 | Not Available | Positive | 3456519 - 3457352 | 30858.1 |
| hypothetical protein | HMPREF1534_03046 | Not Available | Negative | 3457714 - 3457827 | 4161.08 |
| hypothetical protein | HMPREF1534_03047 | Not Available | Positive | 3457872 - 3457991 | 4218.22 |
| hypothetical protein | HMPREF1534_03048 | Not Available | Positive | 3458220 - 3458543 | 12368.9 |
| hypothetical protein | HMPREF1534_03049 | Not Available | Positive | 3458540 - 3458725 | 7153.68 |
| nicotinate (nicotinamide) nucleotide adenylyltransferase | HMPREF1534_03050 | Not Available | Negative | 3458967 - 3459542 | 22221.6 |
| hypothetical protein | HMPREF1534_03051 | Not Available | Negative | 3459521 - 3459709 | 7090.53 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


