Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetraacyldisaccharide 4'-kinase | HMPREF1534_03021 | Not Available | Negative | 3429835 - 3430953 | 43121.4 |
| signal peptide peptidase sppa, 67k type | HMPREF1534_03022 | Not Available | Negative | 3430960 - 3432744 | 65705.7 |
| hypothetical protein | HMPREF1534_03023 | Not Available | Positive | 3432880 - 3433485 | 23142.7 |
| hypothetical protein | HMPREF1534_03024 | Not Available | Positive | 3433558 - 3436398 | 105728.0 |
| hypothetical protein | HMPREF1534_03026 | Not Available | Positive | 3439665 - 3440507 | 31255.0 |
| hypothetical protein | HMPREF1534_03027 | Not Available | Positive | 3440523 - 3441425 | 34566.0 |
| hypothetical protein | HMPREF1534_03028 | Not Available | Positive | 3441422 - 3441787 | 14386.3 |
| mate efflux family protein | HMPREF1534_03029 | Not Available | Positive | 3442634 - 3443983 | 49661.8 |
| adenylosuccinate lyase | HMPREF1534_03030 | Not Available | Positive | 3444078 - 3445424 | 50972.1 |
| pseudouridine synthase | HMPREF1534_03031 | Not Available | Positive | 3445501 - 3446928 | 54853.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


