Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03001 | Not Available | Negative | 3415951 - 3416691 | 28382.4 |
| hypothetical protein | HMPREF1534_03002 | Not Available | Negative | 3416678 - 3417499 | 32136.1 |
| hypothetical protein | HMPREF1534_03003 | Not Available | Negative | 3417486 - 3417764 | 11173.2 |
| hypothetical protein | HMPREF1534_03004 | Not Available | Negative | 3418046 - 3418336 | 11179.1 |
| hypothetical protein | HMPREF1534_03005 | Not Available | Positive | 3418667 - 3419011 | 13313.1 |
| hypothetical protein | HMPREF1534_03006 | Not Available | Negative | 3419070 - 3419780 | 27607.6 |
| hypothetical protein | HMPREF1534_03007 | Not Available | Negative | 3419782 - 3420483 | 27180.0 |
| hypothetical protein | HMPREF1534_03008 | Not Available | Negative | 3420494 - 3421513 | 39481.6 |
| hypothetical protein | HMPREF1534_03009 | Not Available | Negative | 3421528 - 3421737 | 7883.19 |
| hypothetical protein | HMPREF1534_03010 | Not Available | Negative | 3421713 - 3422012 | 11785.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


